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I had this really old culture that started producing really, really small flies so i stoped using it. Then all of a sudden yesterday i saw that at the top of the the container there were all these big flying flies and almost none of the flightless ones.
 

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Contaiminated culture

Sounds like you got a contaminated culture! Since you weren't feeding it out anymore or using it from the sound of things, you might as well have just frozen it. Freezing them is also a way to kill the contaminated culture as opening it up would be complete mayhem!
 
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